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IPPS
2006
IEEE
15 years 10 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
IV
2009
IEEE
128views Visualization» more  IV 2009»
15 years 11 months ago
Large Quasi-Tree Drawing: A Neighborhood Based Approach
In this paper, we present an algorithm to lay out a particular class of graphs coming from real case studies: the quasi-tree graph class. Protein and internet mappings projects ha...
Romain Bourqui, David Auber
ISNN
2004
Springer
15 years 9 months ago
A Novel Clustering Analysis Based on PCA and SOMs for Gene Expression Patterns
This paper proposes a novel clustering analysis algorithm based on principal component analysis (PCA) and self-organizing maps (SOMs) for clustering the gene expression patterns. T...
Hong-Qiang Wang, De-Shuang Huang, Xing-Ming Zhao, ...
TVCG
2011
274views more  TVCG 2011»
14 years 11 months ago
Memory-Scalable GPU Spatial Hierarchy Construction
We present two novel algorithms for constructing spatial hierarchies on GPUs. The first is for kd-trees that automatically balances between the level of parallelism and total mem...
Qiming Hou, Xin Sun, Kun Zhou, Christian Lauterbac...
CLUSTER
2007
IEEE
15 years 10 months ago
Network performance model for TCP/IP based cluster computing
— A new communication model, called the PlogPT model, is proposed to predict communication performance in a commodity cluster where computing nodes communicate using TCP/IP. This...
Akihiro Nomura, Hiroya Matsuba, Yutaka Ishikawa