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BMCBI
2004
135views more  BMCBI 2004»
14 years 10 months ago
Determination of the differentially expressed genes in microarray experiments using local FDR
Background: Thousands of genes in a genomewide data set are tested against some null hypothesis, for detecting differentially expressed genes in microarray experiments. The expect...
Julie Aubert, Avner Bar-Hen, Jean-Jacques Daudin, ...
BMCBI
2004
124views more  BMCBI 2004»
14 years 10 months ago
Tests for finding complex patterns of differential expression in cancers: towards individualized medicine
Background: Microarray studies in cancer compare expression levels between two or more sample groups on thousands of genes. Data analysis follows a population-level approach (e.g....
James Lyons-Weiler, Satish Patel, Michael J. Becic...
BMCBI
2004
151views more  BMCBI 2004»
14 years 10 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
COMBINATORICS
2002
92views more  COMBINATORICS 2002»
14 years 10 months ago
Pattern Avoidance in Permutations: Linear and Cyclic Orders
: We generalize the notion of pattern avoidance to arbitrary functions on ordered sets, and consider specifically three scenarios for permutations: linear, cyclic and hybrid, the f...
Antoine Vella
NAR
2007
95views more  NAR 2007»
14 years 10 months ago
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
With the integration of the KEGG and Predictome databases as well as two search engines for coexpressed genes/proteins using data sets obtained from the Stanford Microarray Databa...
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan C...