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JCC
2008
88views more  JCC 2008»
15 years 1 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
CORR
2007
Springer
60views Education» more  CORR 2007»
15 years 1 months ago
On Minimal Tree Realizations of Linear Codes
A tree decomposition of the coordinates of a code is a mapping from the coordinate set to the set of vertices of a tree. A tree decomposition can be extended to a tree realization,...
Navin Kashyap
SIGECOM
2008
ACM
220views ECommerce» more  SIGECOM 2008»
15 years 1 months ago
Better redistribution with inefficient allocation in multi-unit auctions with unit demand
For the problem of allocating one or more items among a group of competing agents, the Vickrey-Clarke-Groves (VCG) mechanism is strategy-proof and efficient. However, the VCG mech...
Mingyu Guo, Vincent Conitzer
ALIFE
2005
15 years 1 months ago
Transient Phenomena in Learning and Evolution: Genetic Assimilation and Genetic Redistribution
Deacon has recently proposed that complexes of genes can be integrated into functional groups as a result of environmental changes that mask and unmask selection pressures. For exa...
Janet Wiles, James Watson, Bradley Tonkes, Terrenc...
BMCBI
2005
142views more  BMCBI 2005»
15 years 1 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds