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JCC
2008
88views more  JCC 2008»
14 years 11 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
CORR
2007
Springer
60views Education» more  CORR 2007»
14 years 11 months ago
On Minimal Tree Realizations of Linear Codes
A tree decomposition of the coordinates of a code is a mapping from the coordinate set to the set of vertices of a tree. A tree decomposition can be extended to a tree realization,...
Navin Kashyap
SIGECOM
2008
ACM
220views ECommerce» more  SIGECOM 2008»
14 years 11 months ago
Better redistribution with inefficient allocation in multi-unit auctions with unit demand
For the problem of allocating one or more items among a group of competing agents, the Vickrey-Clarke-Groves (VCG) mechanism is strategy-proof and efficient. However, the VCG mech...
Mingyu Guo, Vincent Conitzer
ALIFE
2005
14 years 11 months ago
Transient Phenomena in Learning and Evolution: Genetic Assimilation and Genetic Redistribution
Deacon has recently proposed that complexes of genes can be integrated into functional groups as a result of environmental changes that mask and unmask selection pressures. For exa...
Janet Wiles, James Watson, Bradley Tonkes, Terrenc...
BMCBI
2005
142views more  BMCBI 2005»
14 years 11 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds