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RECOMB
2008
Springer
16 years 1 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
ISCA
2005
IEEE
134views Hardware» more  ISCA 2005»
15 years 7 months ago
A High Throughput String Matching Architecture for Intrusion Detection and Prevention
Network Intrusion Detection and Prevention Systems have emerged as one of the most effective ways of providing security to those connected to the network, and at the heart of alm...
Lin Tan, Timothy Sherwood
ALENEX
2010
156views Algorithms» more  ALENEX 2010»
15 years 2 months ago
Tabulation Based 5-Universal Hashing and Linear Probing
Previously [SODA'04] we devised the fastest known algorithm for 4-universal hashing. The hashing was based on small pre-computed 4-universal tables. This led to a five-fold i...
Mikkel Thorup, Yin Zhang
BMCBI
2005
132views more  BMCBI 2005»
15 years 1 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
WWW
2003
ACM
16 years 2 months ago
Automatic Profile Generation in eRACE
In this paper, we describe the design of a profile generator toolkit, which aims to automatically create realistic user profiles for a mobile personalized portal service. These pr...
Christiana Christophi, Marios D. Dikaiakos