— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Distribution data naturally arise in countless domains, such as meteorology, biology, geology, industry and economics. However, relatively little attention has been paid to data m...
Position-specific scoring matrices have been used extensively to recognize highly conserved protein regions. We present a method for accelerating these searches using a suffix tre...
Knowledge representations using semantic web technologies often provide information which translates to explicit term and predicate taxonomies in relational learning. We show how t...
We have developed a new tool for virtual database screening. This tool, referred to as the Generic Evolutionary Method for molecular DOCKing (GEMDOCK), combines an evolutionary app...