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84
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BMCBI
2008
103views more  BMCBI 2008»
14 years 10 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
87
Voted
DEXA
2007
Springer
150views Database» more  DEXA 2007»
15 years 4 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi
DSD
2008
IEEE
139views Hardware» more  DSD 2008»
15 years 8 hour ago
Discrete Particle Swarm Optimization for Multi-objective Design Space Exploration
Platform-based design represents the most widely used approach to design System-On-Chip (SOC) applications. In this context, the Design Space Exploration (DSE) phase consists of o...
Gianluca Palermo, Cristina Silvano, Vittorio Zacca...
DATE
2007
IEEE
117views Hardware» more  DATE 2007»
15 years 4 months ago
Rapid and accurate latch characterization via direct Newton solution of setup/hold times
Characterizing setup/hold times of latches and registers, a crucial component for achieving timing closure of large digital designs, typically occupies months of computation in in...
Shweta Srivastava, Jaijeet S. Roychowdhury
IEAAIE
2004
Springer
15 years 3 months ago
Iterative Semi-supervised Learning: Helping the User to Find the Right Records
This paper proposes extending semi-supervised learning by allowing an ongoing interaction between a user and the system. The extension is intended to not only to speed up search fo...
Chris Drummond