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BMCBI
2005
132views more  BMCBI 2005»
14 years 10 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
RECOMB
2008
Springer
15 years 10 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
CIKM
2008
Springer
15 years 2 days ago
Real-time new event detection for video streams
Online detection of video clips that present previously unseen events in a video stream is still an open challenge to date. For this online new event detection (ONED) task, existi...
Gang Luo, Rong Yan, Philip S. Yu
ALENEX
2010
156views Algorithms» more  ALENEX 2010»
14 years 11 months ago
Tabulation Based 5-Universal Hashing and Linear Probing
Previously [SODA'04] we devised the fastest known algorithm for 4-universal hashing. The hashing was based on small pre-computed 4-universal tables. This led to a five-fold i...
Mikkel Thorup, Yin Zhang
182
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SIGMOD
2009
ACM
190views Database» more  SIGMOD 2009»
15 years 10 months ago
Optimizing complex extraction programs over evolving text data
Most information extraction (IE) approaches have considered only static text corpora, over which we apply IE only once. Many real-world text corpora however are dynamic. They evol...
Fei Chen 0002, Byron J. Gao, AnHai Doan, Jun Yang ...