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BMCBI
2008
172views more  BMCBI 2008»
15 years 2 months ago
Compo: composite motif discovery using discrete models
Background: Computational discovery of motifs in biomolecular sequences is an established field, with applications both in the discovery of functional sites in proteins and regula...
Geir Kjetil Sandve, Osman Abul, Finn Drablø...
BMCBI
2010
70views more  BMCBI 2010»
15 years 2 months ago
The Text-mining based PubChem Bioassay neighboring analysis
Background: In recent years, the number of High Throughput Screening (HTS) assays deposited in PubChem has grown quickly. As a result, the volume of both the structured informatio...
Lianyi Han, Tugba O. Suzek, Yanli Wang, Steve H. B...
CIKM
2009
Springer
15 years 8 months ago
Beyond hyperlinks: organizing information footprints in search logs to support effective browsing
While current search engines serve known-item search such as homepage finding very well, they generally cannot support exploratory search effectively. In exploratory search, user...
Xuanhui Wang, Bin Tan, Azadeh Shakery, ChengXiang ...
BMCBI
2007
162views more  BMCBI 2007»
15 years 2 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
BMCBI
2011
14 years 9 months ago
Taxon ordering in phylogenetic trees: a workbench test
Background: Phylogenetic trees are an important tool for representing evolutionary relationships among organisms. In a phylogram or chronogram, the ordering of taxa is not conside...
Francesco Cerutti, Luigi Bertolotti, Tony L. Goldb...