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BMCBI
2005
131views more  BMCBI 2005»
15 years 4 months ago
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases
Background: Complex biological database systems have become key computational tools used daily by scientists and researchers. Many of these systems must be capable of executing on...
Marko Srdanovic, Ulf Schenk, Michael Schwieger, Fa...
BMCBI
2005
125views more  BMCBI 2005»
15 years 4 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
BMCBI
2005
178views more  BMCBI 2005»
15 years 4 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
BMCBI
2005
87views more  BMCBI 2005»
15 years 4 months ago
BioCreAtIvE Task 1A: gene mention finding evaluation
Background: The biological research literature is a major repository of knowledge. As the amount of literature increases, it will get harder to find the information of interest on...
Alexander S. Yeh, Alexander A. Morgan, Marc E. Col...
BMCBI
2005
103views more  BMCBI 2005»
15 years 4 months ago
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management
Background: Improvements of bio-nano-technologies and biomolecular techniques have led to increasing production of high-throughput experimental data. Spotted cDNA microarray is on...
Sarah Burgarella, Dario Cattaneo, Francesco Pincir...
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