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CIKM
2005
Springer
15 years 5 months ago
A hybrid approach to NER by MEMM and manual rules
This paper describes a framework for defining domain specific Feature Functions in a user friendly form to be used in a Maximum Entropy Markov Model (MEMM) for the Named Entity Re...
Moshe Fresko, Binyamin Rosenfeld, Ronen Feldman
BMCBI
2010
227views more  BMCBI 2010»
14 years 11 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
BMCBI
2008
115views more  BMCBI 2008»
14 years 11 months ago
Probe signal correction for differential methylation hybridization experiments
Background: Non-biological signal (or noise) has been the bane of microarray analysis. Hybridization effects related to probe-sequence composition and DNA dye-probe interactions h...
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang,...
BMCBI
2007
106views more  BMCBI 2007»
14 years 11 months ago
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive as
Background: A widely-used approach for discovering functional and physical interactions among proteins involves phylogenetic profile comparisons (PPCs). Here, proteins with simila...
Raja Jothi, Teresa M. Przytycka, L. Aravind