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» Stepwise detection of recombination breakpoints in sequence ...
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BIOINFORMATICS
2005
47views more  BIOINFORMATICS 2005»
14 years 9 months ago
Stepwise detection of recombination breakpoints in sequence alignments
Jinko Graham, Brad McNeney, Françoise Seill...
86
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BMCBI
2006
92views more  BMCBI 2006»
14 years 9 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2006
115views more  BMCBI 2006»
14 years 9 months ago
Detecting recombination in evolving nucleotide sequences
Background: Genetic recombination can produce heterogeneous phylogenetic histories within a set of homologous genes. These recombination events can be obscured by subsequent resid...
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
50
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BIOINFORMATICS
2005
58views more  BIOINFORMATICS 2005»
14 years 9 months ago
RDP2: recombination detection and analysis from sequence alignments
Darren P. Martin, C. Williamson, David Posada
94
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GCB
2000
Springer
137views Biometrics» more  GCB 2000»
15 years 1 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright