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» Stochastic Model of Protease-Ligand Reactions
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SIAMSC
2008
131views more  SIAMSC 2008»
13 years 6 months ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
ENTCS
2010
154views more  ENTCS 2010»
13 years 3 months ago
Process Algebra with Hooks for Models of Pattern Formation
We introduce Process Algebra with Hooks (PAH). In PAH processes represent different layers action, from biochemistry to tissue, and special synchronisations via hook actions ensur...
Andrea Degasperi, Muffy Calder
MMAS
2010
Springer
13 years 1 months ago
Incorporating Active Transport of Cellular Cargo in Stochastic Mesoscopic Models of Living Cells
We propose a new multiscale method to incorporate active transport of cargo particles in biological cells in stochastic, mesoscopic models of reaction-transport processes. Given a...
Andreas Hellander, Per Lötstedt
CLEIEJ
2006
88views more  CLEIEJ 2006»
13 years 6 months ago
A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
Concurrent process calculi are powerful formalisms for modelling concurrent systems. The mathematical style underlying process calculi allow to both model and verify properties of...
Carlos Olarte, Camilo Rueda
EUROGP
2006
Springer
140views Optimization» more  EUROGP 2006»
13 years 10 months ago
Evolving Noisy Oscillatory Dynamics in Genetic Regulatory Networks
We introduce a genetic programming (GP) approach for evolving genetic networks that demonstrate desired dynamics when simulated as a discrete stochastic process. Our representation...
André Leier, P. Dwight Kuo, Wolfgang Banzha...