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JCB
2002
131views more  JCB 2002»
14 years 9 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong
BMCBI
2006
179views more  BMCBI 2006»
14 years 9 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
ENTCS
2008
96views more  ENTCS 2008»
14 years 9 months ago
Undecidability of Model Checking in Brane Logic
The Brane Calculus is a calculus intended to model the structure and the dynamics of biological membranes. In order to express properties of systems in this calculus, in previous ...
Giorgio Bacci, Marino Miculan
GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
14 years 10 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...
ATAL
2003
Springer
15 years 2 months ago
A multi-agent system for the quantitative simulation of biological networks
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....