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BMCBI
2010
149views more  BMCBI 2010»
14 years 10 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
IPPS
2000
IEEE
15 years 2 months ago
Optimal Periodic Remapping of Bulk Synchronous Computations on Multiprogrammed Distributed Systems
For bulk synchronous computations that have nondeterministic behaviors, dynamic remapping is an effective approach to ensure parallel efficiency. There are two basic issues in re...
Ngo-Tai Fong, Cheng-Zhong Xu, Le Yi Wang
UAI
2001
14 years 11 months ago
Iterative Markov Chain Monte Carlo Computation of Reference Priors and Minimax Risk
We present an iterative Markov chain Monte Carlo algorithm for computing reference priors and minimax risk for general parametric families. Our approach uses MCMC techniques based...
John D. Lafferty, Larry A. Wasserman
IFM
2010
Springer
152views Formal Methods» more  IFM 2010»
14 years 8 months ago
Satisfaction Meets Expectations - Computing Expected Values of Probabilistic Hybrid Systems with SMT
Stochastic satisfiability modulo theories (SSMT), which is an extension of satisfiability modulo theories with randomized quantification, has successfully been used as a symboli...
Martin Fränzle, Tino Teige, Andreas Eggers
TC
2008
14 years 10 months ago
Adaptive Fault Management of Parallel Applications for High-Performance Computing
As the scale of high-performance computing (HPC) continues to grow, failure resilience of parallel applications becomes crucial. In this paper, we present FT-Pro, an adaptive fault...
Zhiling Lan, Yawei Li