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BMCBI
2007
157views more  BMCBI 2007»
14 years 9 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
HCW
1999
IEEE
15 years 2 months ago
Simulation of Task Graph Systems in Heterogeneous Computing Environments
This paper describes a simulation tool for the analysis of complex jobs described in the form of task graphs. The simulation procedure relies on the PN-based topological represent...
Noé Lopez-Benitez, Ja-Young Hyon
CMSB
2007
Springer
15 years 1 months ago
Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus
This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...
Andrew Phillips, Luca Cardelli
72
Voted
CORR
2010
Springer
101views Education» more  CORR 2010»
14 years 9 months ago
Computing the Least Fixed Point of Positive Polynomial Systems
We consider equation systems of the form X1 = f1(X1, . . . , Xn), . . . , Xn = fn(X1, . . . , Xn) where f1, . . . , fn are polynomials with positive real coefficients. In vector fo...
Javier Esparza, Stefan Kiefer, Michael Luttenberge...
74
Voted
DAC
2008
ACM
15 years 10 months ago
Stochastic integral equation solver for efficient variation-aware interconnect extraction
In this paper we present an efficient algorithm for extracting the complete statistical distribution of the input impedance of interconnect structures in the presence of a large n...
Tarek Moselhy, Luca Daniel