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» Stochastic pairwise alignments
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HPDC
2010
IEEE
14 years 11 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BIOINFORMATICS
2011
14 years 1 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
JSAC
2010
120views more  JSAC 2010»
14 years 8 months ago
A simple and scalable algorithm for alignment in broadcast networks
We consider the problem of coordinating a group of mobile nodes communicating through a wireless medium. The objective of the network is the alignment of all the nodes towards a c...
Roberto Pagliari, Mehmet E. Yildiz, Shrut Kirti, K...
91
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NIPS
2004
14 years 11 months ago
Multiple Alignment of Continuous Time Series
Multiple realizations of continuous-valued time series from a stochastic process often contain systematic variations in rate and amplitude. To leverage the information contained i...
Jennifer Listgarten, Radford M. Neal, Sam T. Rowei...
ACSAC
2003
IEEE
15 years 3 months ago
Intrusion Detection: A Bioinformatics Approach
This paper addresses the problem of detecting masquerading, a security attack in which an intruder assumes the identity of a legitimate user. Many approaches based on Hidden Marko...
Scott E. Coull, Joel W. Branch, Boleslaw K. Szyman...