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» Storage and Retrieval of XML Data using Relational Databases
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EDBT
2009
ACM
277views Database» more  EDBT 2009»
15 years 2 months ago
G-hash: towards fast kernel-based similarity search in large graph databases
Structured data including sets, sequences, trees and graphs, pose significant challenges to fundamental aspects of data management such as efficient storage, indexing, and simila...
Xiaohong Wang, Aaron M. Smalter, Jun Huan, Gerald ...
CIDR
2007
177views Algorithms» more  CIDR 2007»
14 years 11 months ago
bdbms - A Database Management System for Biological Data
Biologists are increasingly using databases for storing and managing their data. Biological databases typically consist of a mixture of raw data, metadata, sequences, annotations,...
Mohamed Y. Eltabakh, Mourad Ouzzani, Walid G. Aref
BMCBI
2008
154views more  BMCBI 2008»
14 years 10 months ago
Extension of the COG and arCOG databases by amino acid and nucleotide sequences
Background: The current versions of the COG and arCOG databases, both excellent frameworks for studies in comparative and functional genomics, do not contain the nucleotide sequen...
Florian Meereis, Michael Kaufmann
SIGMOD
2008
ACM
103views Database» more  SIGMOD 2008»
15 years 10 months ago
XArch: archiving scientific and reference data
Database archiving is important for the retrieval of old versions of a database and for temporal queries over the history of data. We demonstrate XArch, a management system for ma...
Heiko Müller, Ioannis Koltsidas, Peter Bunema...
BMCBI
2008
204views more  BMCBI 2008»
14 years 10 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...