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108
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BMCBI
2008
242views more  BMCBI 2008»
15 years 25 days ago
annot8r: GO, EC and KEGG annotation of EST datasets
Background: The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is availa...
Ralf Schmid, Mark L. Blaxter
109
Voted
BMCBI
2006
93views more  BMCBI 2006»
15 years 23 days ago
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
KAIS
2006
247views more  KAIS 2006»
15 years 20 days ago
XCQ: A queriable XML compression system
XML has already become the de facto standard for specifying and exchanging data on the Web. However, XML is by nature verbose and thus XML documents are usually large in size, a fa...
Wilfred Ng, Wai Yeung Lam, Peter T. Wood, Mark Lev...
129
Voted
TJS
2008
105views more  TJS 2008»
15 years 19 days ago
Using a relational database for scalable XML search
XML is a flexible and powerful tool that enables information and security sharing in heterogeneous environments. Scalable technologies are needed to effectively manage the growing...
Rebecca Cathey, Steven M. Beitzel, Eric C. Jensen,...
111
Voted
BMCBI
2004
92views more  BMCBI 2004»
15 years 18 days ago
BioBuilder as a database development and functional annotation platform for proteins
Background: The explosion in biological information creates the need for databases that are easy to develop, easy to maintain and can be easily manipulated by annotators who are m...
J. Daniel Navarro, Naveen Talreja, Suraj Peri, B. ...