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» Strand Algebras for DNA Computing
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DNA
2007
Springer
159views Bioinformatics» more  DNA 2007»
15 years 3 months ago
Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications
While algorithmic DNA self-assembly is, in theory, capable of forming complex patterns, its experimental demonstration has been limited by significant assembly errors. In this pa...
Urmi Majumder, Thomas H. LaBean, John H. Reif
EDBT
2010
ACM
117views Database» more  EDBT 2010»
15 years 4 months ago
Anchoring millions of distinct reads on the human genome within seconds
With the advent of next-generation DNA sequencing machines, there is an increasing need for the development of computational tools that can anchor accurately and expediently the m...
Tien Huynh, Michail Vlachos, Isidore Rigoutsos
BMCBI
2004
97views more  BMCBI 2004»
14 years 9 months ago
Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage pattern
Background: Oligonucleotide frequencies were shown to be conserved signatures for bacterial genomes, however, the underlying constraints have yet not been resolved in detail. In t...
Oleg N. Reva, Burkhard Tümmler
72
Voted
UC
2005
Springer
15 years 3 months ago
A Computational Model for Self-assembling Flexible Tiles
We present a theoretical model for self-assembling tiles with flexible branches motivated by DNA branched junction molecules. We encode an instance of a “problem” as a pot of ...
Natasa Jonoska, Gregory L. McColm
IJFCS
2007
79views more  IJFCS 2007»
14 years 9 months ago
Intra-Molecular Template-Guided Recombination
The stichotrichous ciliates are uni-cellular organisms which undergo a series of complex unscrambling of genetic encodings. This ability to rearrange DNA to produce the correct pr...
Mark Daley, Michael Domaratzki, Alexis Morris