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» String Distances and Uniformities
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FOCS
2005
IEEE
15 years 5 months ago
The Closest Substring problem with small distances
In the CLOSEST SUBSTRING problem k strings s1, ..., sk are given, and the task is to find a string s of length L such that each string si has a consecutive substring of length L ...
Dániel Marx
SODA
2010
ACM
181views Algorithms» more  SODA 2010»
14 years 10 months ago
Near-Optimal Sublinear Time Algorithms for Ulam Distance
We give near-tight bounds for estimating the edit distance between two non-repetitive strings (Ulam distance) with constant approximation, in sub-linear time. For two strings of l...
Alexandr Andoni, Huy L. Nguyen
DIS
2004
Springer
15 years 5 months ago
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance
We consider the problem of discovering the optimal pair of substring patterns with bounded distance α, from a given set S of strings. We study two kinds of pattern classes, one is...
Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö,...
ISAAC
2003
Springer
133views Algorithms» more  ISAAC 2003»
15 years 4 months ago
The Intractability of Computing the Hamming Distance
Given a string x and a language L, the Hamming distance of x to L is the minimum Hamming distance of x to any string in L. The edit distance of a string to a language is analogous...
Bodo Manthey, Rüdiger Reischuk
CPM
2007
Springer
73views Combinatorics» more  CPM 2007»
15 years 3 months ago
Move-to-Front, Distance Coding, and Inversion Frequencies Revisited
Move-to-Front, Distance Coding and Inversion Frequencies are three simple and effective techniques used to process the output of the Burrows-Wheeler Transform. In this paper we pr...
Travis Gagie, Giovanni Manzini