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» Structural Results For Planar Sets With Many Similar Subsets
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BMCBI
2008
166views more  BMCBI 2008»
14 years 12 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
BMCBI
2008
175views more  BMCBI 2008»
14 years 12 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
CISS
2008
IEEE
15 years 6 months ago
A lower-bound on the number of rankings required in recommender systems using collaborativ filtering
— We consider the situation where users rank items from a given set, and each user ranks only a (small) subset of all items. We assume that users can be classified into C classe...
Peter Marbach
113
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BMCBI
2007
134views more  BMCBI 2007»
14 years 12 months ago
Automatic generation of 3D motifs for classification of protein binding sites
Background: Since many of the new protein structures delivered by high-throughput processes do not have any known function, there is a need for structure-based prediction of prote...
Jean-Christophe Nebel, Pawel Herzyk, David R. Gilb...
BMCBI
2010
164views more  BMCBI 2010»
14 years 12 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...