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JMLR
2008
144views more  JMLR 2008»
15 years 5 months ago
Search for Additive Nonlinear Time Series Causal Models
Pointwise consistent, feasible procedures for estimating contemporaneous linear causal structure from time series data have been developed using multiple conditional independence ...
Tianjiao Chu, Clark Glymour
BMCBI
2007
109views more  BMCBI 2007»
15 years 5 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
NIPS
2007
15 years 6 months ago
Fixing Max-Product: Convergent Message Passing Algorithms for MAP LP-Relaxations
We present a novel message passing algorithm for approximating the MAP problem in graphical models. The algorithm is similar in structure to max-product but unlike max-product it ...
Amir Globerson, Tommi Jaakkola
TALG
2008
131views more  TALG 2008»
15 years 5 months ago
Kinetic and dynamic data structures for closest pair and all nearest neighbors
We present simple, fully dynamic and kinetic data structures, which are variants of a dynamic two-dimensional range tree, for maintaining the closest pair and all nearest neighbors...
Pankaj K. Agarwal, Haim Kaplan, Micha Sharir
BMCBI
2008
140views more  BMCBI 2008»
15 years 5 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh