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JCPHY
2011
109views more  JCPHY 2011»
14 years 9 months ago
Fast construction of hierarchical matrix representation from matrix-vector multiplication
We develop a hierarchical matrix construction algorithm using matrixvector multiplications, based on the randomized singular value decomposition of low-rank matrices. The algorith...
Lin Lin, Jianfeng Lu, Lexing Ying
BMCBI
2010
154views more  BMCBI 2010»
15 years 6 months ago
Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble
Background: Modelling the ligand binding site of a protein is an important component of understanding proteinligand interactions and is being actively studied. Even if the side ch...
Edon Sung, Sangsoo Kim, Whanchul Shin
BMCBI
2007
115views more  BMCBI 2007»
15 years 6 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
CMOT
2004
83views more  CMOT 2004»
15 years 6 months ago
Networks, Fields and Organizations: Micro-Dynamics, Scale and Cohesive Embeddings
Social action is situated in fields that are simultaneously composed of interpersonal ties and relations among organizations, which are both usefully characterized as social netwo...
Douglas R. White, Jason Owen-Smith, James Moody, W...
ICSM
2002
IEEE
15 years 11 months ago
Documenting Pattern Use in Java Programs
Design patterns are widely recognized as important software development methods. Their use as software understanding tools, though generally acknowledged has been scarcely explore...
Marco Torchiano