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CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 11 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
ICSE
2004
IEEE-ACM
15 years 11 months ago
Precise Modeling of Design Patterns in UML
Prior research attempts to formalize the structure of object-oriented design patterns for a more precise specification of design patterns. It also allows automation support to be ...
Jeffrey Ka-Hing Mak, Clifford Sze-Tsan Choy, Danie...
SODA
2010
ACM
144views Algorithms» more  SODA 2010»
15 years 4 months ago
Cell-Probe Lower Bounds for Succinct Partial Sums
The partial sums problem in succinct data structures asks to preprocess an array A[1 . . n] of bits into a data structure using as close to n bits as possible, and answer queries ...
Mihai Patrascu, Emanuele Viola
RECOMB
2009
Springer
16 years 6 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
ATS
2005
IEEE
100views Hardware» more  ATS 2005»
15 years 12 months ago
A Methodology to Compute Bounds on Crosstalk Effects in Arbitrary Interconnects
In this paper, we present a methodology that uses the moments of a generic crosstalk pulse signal to derive upper bounds on the amplitude of crosstalk pulse in arbitrary interconn...
Wichian Sirisaengtaksin, Sandeep K. Gupta