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CIKM
2005
Springer
15 years 3 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
PPOPP
2012
ACM
13 years 5 months ago
A speculation-friendly binary search tree
We introduce the first binary search tree algorithm designed for speculative executions. Prior to this work, tree structures were mainly designed for their pessimistic (non-specu...
Tyler Crain, Vincent Gramoli, Michel Raynal
RECOMB
2011
Springer
14 years 20 days ago
Algorithms for MDC-Based Multi-locus Phylogeny Inference
One of the criteria for inferring a species tree from a collection of gene trees, when gene tree incongruence is assumed to be due to incomplete lineage sorting (ILS), is minimize ...
Yun Yu, Tandy Warnow, Luay Nakhleh
SIGMETRICS
2004
ACM
106views Hardware» more  SIGMETRICS 2004»
15 years 3 months ago
Performance analysis of BSTs in system software
Binary search tree (BST) based data structures, such as AVL trees, red-black trees, and splay trees, are often used in system software, such as operating system kernels. Choosing ...
Ben Pfaff
SAC
2005
ACM
15 years 3 months ago
Indexing continuously changing data with mean-variance tree
: Traditional spatial indexes like R-tree usually assume the database is not updated frequently. In applications like location-based services and sensor networks, this assumption i...
Yuni Xia, Sunil Prabhakar, Shan Lei, Reynold Cheng...