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88
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JUCS
2010
152views more  JUCS 2010»
14 years 4 months ago
Verification of Structural Pattern Conformance Using Logic Programming
: This paper formalizes UML class diagrams and structural patterns as mathematical objects and provides a precise notion of conformance of a structural model specified as a class d...
Lunjin Lu, Dae-Kyoo Kim, Yuanlin Zhu, Sangsig Kim
ITNG
2007
IEEE
15 years 4 months ago
Super Iterator A design pattern for Algorithm and Data structure collections
The Super Iterator pattern, like the standard Iterator pattern, traverses an unknown data structure without exposing that structure. With the standard Iterator pattern, clients mu...
Andre Oboler, Charles Twardy, David W. Albrecht
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
15 years 3 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
DM
2006
83views more  DM 2006»
14 years 9 months ago
Language structure of pattern Sturmian words
Pattern Sturmian words introduced by Kamae and Zamboni KZ1, KZ2] are an analogy of Sturmian words for the maximal pattern complexity instead of the block complexity. So far, two k...
Teturo Kamae, Hui Rao, Bo Tan, Yu-Mei Xue
80
Voted
MCS
2010
Springer
15 years 2 months ago
An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction
Abstract. The computational genome-wide annotation of gene functions requires the prediction of hierarchically structured functional classes and can be formalized as a multiclass, ...
Matteo Re, Giorgio Valentini