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HPCN
1997
Springer
15 years 8 months ago
Parallel Solution of Irregular, Sparse Matrix Problems Using High Performance Fortran
For regular, sparse, linear systems, like those derived from regular grids, using High Performance Fortran (HPF) for iterative solvers is straightforward. However, for irregular ma...
Eric de Sturler, Damian Loher
ISCA
2010
IEEE
214views Hardware» more  ISCA 2010»
15 years 6 months ago
Translation caching: skip, don't walk (the page table)
This paper explores the design space of MMU caches that accelerate virtual-to-physical address translation in processor architectures, such as x86-64, that use a radix tree page t...
Thomas W. Barr, Alan L. Cox, Scott Rixner
BMCBI
2010
117views more  BMCBI 2010»
15 years 4 months ago
Beyond rotamers: a generative, probabilistic model of side chains in proteins
Background: Accurately covering the conformational space of amino acid side chains is essential for important applications such as protein design, docking and high resolution stru...
Tim Harder, Wouter Boomsma, Martin Paluszewski, Je...
BMCBI
2010
183views more  BMCBI 2010»
15 years 4 months ago
Active learning for human protein-protein interaction prediction
Background: Biological processes in cells are carried out by means of protein-protein interactions. Determining whether a pair of proteins interacts by wet-lab experiments is reso...
Thahir P. Mohamed, Jaime G. Carbonell, Madhavi Gan...
166
Voted
BMCBI
2010
121views more  BMCBI 2010»
15 years 4 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...