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RECOMB
2004
Springer
15 years 10 months ago
Structured motifs search
In this paper we describe an algorithm for the localization of structured models, i.e. sequences of (simple) motifs and distance constraints. It basically combines standard patter...
Alberto Policriti, Nicola Vitacolonna, Michele Mor...
VLDB
2007
ACM
152views Database» more  VLDB 2007»
15 years 10 months ago
Structured Materialized Views for XML Queries
The performance of XML database queries can be greatly enhanced by rewriting them using materialized views. We study the problem of rewriting a query using materialized views, whe...
Andrei Arion, Ioana Manolescu, Véronique Be...
ICPR
2002
IEEE
15 years 2 months ago
Extracting Fractal Features for Analyzing Protein Structure
This paper is concerned with the development of a computational methodology based on fractal geometry for determining 3D structure of protein with imagery projection operations. I...
Yu Tao, Thomas R. Ioerger, James C. Sacchettini
AAIM
2007
Springer
145views Algorithms» more  AAIM 2007»
15 years 4 months ago
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...
Minghui Jiang
MFCS
2007
Springer
15 years 3 months ago
Structural Analysis of Gapped Motifs of a String
Abstract. We investigate the structure of the set of gapped motifs (repeated patterns with don’t cares) of a given string of symbols. A natural equivalence classification is int...
Esko Ukkonen