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BMCBI
2007
93views more  BMCBI 2007»
15 years 3 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
BMCBI
2006
155views more  BMCBI 2006»
15 years 3 months ago
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
Background: The main aim of this study was to develop and implement an algorithm for the rapid, accurate and automated identification of paths leading from buried protein clefts, ...
Martin Petrek, Michal Otyepka, Pavel Banás,...
BMCBI
2007
119views more  BMCBI 2007»
15 years 3 months ago
Conceptual-level workflow modeling of scientific experiments using NMR as a case study
Background: Scientific workflows improve the process of scientific experiments by making computations explicit, underscoring data flow, and emphasizing the participation of humans...
Kacy K. Verdi, Heidi J. C. Ellis, Michael R. Gryk
BMCBI
2006
103views more  BMCBI 2006»
15 years 3 months ago
Domain-based small molecule binding site annotation
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule bindi...
Kevin A. Snyder, Howard J. Feldman, Michel Dumonti...
ACSD
2004
IEEE
102views Hardware» more  ACSD 2004»
15 years 7 months ago
Arrays and Contracts for the Specification and Analysis of Regular Systems
We explore a structuring mechanism for reactive systems, based on two ideas: array iterators allow the description of regular systems; logical-time contracts allow local or global...
Florence Maraninchi, Lionel Morel