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» Structured Parallel Simulation Modeling and Programming
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NCA
2006
IEEE
15 years 8 months ago
Parallelization of Geant4 Using TOP-C and Marshalgen
Geant4 is a very large, highly accurate toolkit for Monte Carlo simulation of particle-matter interaction. It has been applied to high-energy physics, cosmic ray modeling, radiati...
Gene Cooperman, Viet Ha Nguyen, Igor Malioutov
HPDC
2010
IEEE
15 years 3 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
126
Voted
XSYM
2009
Springer
139views Database» more  XSYM 2009»
15 years 8 months ago
A Data Parallel Algorithm for XML DOM Parsing
Abstract. The extensible markup language XML has become the de facto standard for information representation and interchange on the Internet. XML parsing is a core operation perfor...
Bhavik Shah, Praveen Rao, Bongki Moon, Mohan Rajag...
IPPS
2000
IEEE
15 years 6 months ago
Ordering Unstructured Meshes for Sparse Matrix Computations on Leading Parallel Systems
Abstract. Computer simulations of realistic applications usually require solving a set of non-linear partial di erential equations PDEs over a nite region. The process of obtaini...
Leonid Oliker, Xiaoye S. Li, Gerd Heber, Rupak Bis...
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
15 years 7 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling