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AAECC
2007
Springer
111views Algorithms» more  AAECC 2007»
15 years 5 months ago
When cache blocking of sparse matrix vector multiply works and why
Abstract. We present new performance models and a new, more compact data structure for cache blocking when applied to the sparse matrixvector multiply (SpM×V) operation, y ← y +...
Rajesh Nishtala, Richard W. Vuduc, James Demmel, K...
CANDC
2006
ACM
15 years 5 months ago
Hydrophobic collapse in (in silico) protein folding
A model of hydrophobic collapse, which is treated as the driving force for protein folding, is presented. This model is the superposition of three models commonly used in protein ...
Michal Brylinski, Leszek Konieczny, Irena Roterman
122
Voted
JBCB
2006
60views more  JBCB 2006»
15 years 5 months ago
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...
Anantharaman Kalyanaraman, Srinivas Aluru
ML
2008
ACM
222views Machine Learning» more  ML 2008»
15 years 5 months ago
Boosted Bayesian network classifiers
The use of Bayesian networks for classification problems has received significant recent attention. Although computationally efficient, the standard maximum likelihood learning me...
Yushi Jing, Vladimir Pavlovic, James M. Rehg
ML
2006
ACM
15 years 5 months ago
Relational IBL in classical music
It is well known that many hard tasks considered in machine learning and data mining can be solved in a rather simple and robust way with an instanceand distance-based approach. In...
Asmir Tobudic, Gerhard Widmer