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BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
15 years 6 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
ICEIS
2003
IEEE
15 years 5 months ago
The Protein Structure Prediction Module of the Prot-Grid Information System
: In this work, we describe the protein secondary structure prediction module of a distributed bio-informatics system. Protein databases contain over a million of sequenced protein...
Dimitrios Vogiatzis, Dimitrios Frosyniotis, George...
BMCBI
2006
125views more  BMCBI 2006»
14 years 12 months ago
Automated functional classification of experimental and predicted protein structures
Background: Proteins that are similar in sequence or structure may perform different functions in nature. In such cases, function cannot be inferred from sequence or structural si...
Kai Wang, Ram Samudrala
APBC
2004
166views Bioinformatics» more  APBC 2004»
15 years 1 months ago
THEMATICS is Effective for Active Site Prediction in Comparative Model Structures
THEMATICS (Theoretical Microscopic Titration Curves) is a simple, reliable computational predictor of the active sites of enzymes from structure. Our method, based on well-establi...
Ihsan A. Shehadi, Alper Uzun, Leonel F. Murga, Val...
CDES
2006
97views Hardware» more  CDES 2006»
15 years 1 months ago
Protein Secondary Structure Prediction Accuracy versus Reduction Methods
Predicting protein secondary structure is a key step in determining the 3D structure of a protein that determines its function. The Dictionary of Secondary Structure of Proteins (...
Saad Osman Abdalla Subair, Safaai Deris