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RECOMB
2005
Springer
16 years 2 months ago
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Abstract. Current approaches for identification and detection of transcription factor binding sites rely on an extensive set of known target genes. Here we describe a novel structu...
Tommy Kaplan, Nir Friedman, Hanah Margalit
CEC
2011
IEEE
14 years 1 months ago
Comparing alternative energy functions for the HP model of protein structure prediction
Abstract—Protein structure prediction is the problem of finding the functional conformation of a protein given only its amino uence. The HP lattice model is an abstract formulat...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
ICML
2009
IEEE
16 years 2 months ago
Unsupervised search-based structured prediction
We describe an adaptation and application of a search-based structured prediction algorithm "Searn" to unsupervised learning problems. We show that it is possible to red...
Hal Daumé III
ALT
2008
Springer
15 years 11 months ago
Exploiting Cluster-Structure to Predict the Labeling of a Graph
Abstract. The nearest neighbor and the perceptron algorithms are intuitively motivated by the aims to exploit the “cluster” and “linear separation” structure of the data to...
Mark Herbster
BMCBI
2006
102views more  BMCBI 2006»
15 years 2 months ago
Prediction of protein structural class with Rough Sets
Background: A new method for the prediction of protein structural classes is constructed based on Rough Sets algorithm, which is a rule-based data mining method. Amino acid compos...
Youfang Cao, Shi Liu, Lida Zhang, Jie Qin, Jiang W...