We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...
Abstract. In this paper we develop an algorithm for structured prediction that optimizes against complex performance measures, those which are a function of false positive and fals...
Accurate and reliable protein structure prediction (PSP) eludes researchers primarily becausethe searchfor theminimumenergyconformeris computationallyintractable. This research di...
Charles E. Kaiser, Laurence D. Merkle, Gary B. Lam...
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
Weintroduce a parallel approach, "DT-SELECT," for selecting features used by inductive learning algorithms to predict protein secondary structure. DT-SELECTis able to ra...