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PPDP
2005
Springer
15 years 11 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
155
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GECCO
2006
Springer
176views Optimization» more  GECCO 2006»
15 years 9 months ago
A genetic algorithm with backtracking for protein structure prediction
In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...
Clayton Matthew Johnson, Anitha Katikireddy
EVOW
2012
Springer
14 years 1 months ago
Multiobjectivizing the HP Model for Protein Structure Prediction
Abstract. The hydrophobic-polar (HP) model for protein structure preabstracts the fact that hydrophobic interactions are a dominant force in the protein folding process. This model...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
JMLR
2012
13 years 8 months ago
Randomized Optimum Models for Structured Prediction
One approach to modeling structured discrete data is to describe the probability of states via an energy function and Gibbs distribution. A recurring difficulty in these models is...
Daniel Tarlow, Ryan Prescott Adams, Richard S. Zem...
ICML
2005
IEEE
16 years 6 months ago
Learning structured prediction models: a large margin approach
Benjamin Taskar, Vassil Chatalbashev, Daphne Kolle...