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PROCEDIA
2010
109views more  PROCEDIA 2010»
14 years 11 months ago
Ridge regression ensemble for toxicity prediction
Traditional methods of assessing chemical toxicity of various compounds require tests on animals, which raises ethical concerns and is expensive. Current legislation may lead to a...
Marcin Budka, Bogdan Gabrys
BMCBI
2008
135views more  BMCBI 2008»
15 years 4 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BIBE
2005
IEEE
116views Bioinformatics» more  BIBE 2005»
15 years 10 months ago
Stochastic Model of Protease-Ligand Reactions
Prediction of protein tertiary structure based on amino acid sequence is one of the most challenging open questions in computational molecular biology. The two most common experim...
Paul E. Anderson, Douglas W. Raiford, Deacon J. Sw...
LPAR
2005
Springer
15 years 10 months ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...
BMCBI
2008
111views more  BMCBI 2008»
15 years 4 months ago
Protein contact order prediction from primary sequences
Background: Contact order is a topological descriptor that has been shown to be correlated with several interesting protein properties such as protein folding rates and protein tr...
Yi Shi, Jianjun Zhou, David Arndt, David S. Wishar...