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» Structured Sparsity in Structured Prediction
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APBC
2003
134views Bioinformatics» more  APBC 2003»
15 years 1 months ago
A Framework for Improving Protein Structure Predictions by Teamwork
Predicting the three dimensional structure of proteins is a difficult task. In the last years several approaches have been proposed for performing this task taking into account d...
Luigi Palopoli, Giorgio Terracina
BMCBI
2007
89views more  BMCBI 2007»
14 years 11 months ago
Selective prediction of interaction sites in protein structures with THEMATICS
Background: Methods are now available for the prediction of interaction sites in protein 3D structures. While many of these methods report high success rates for site prediction, ...
Ying Wei, Jaeju Ko, Leonel F. Murga, Mary Jo Ondre...
109
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JMLR
2010
155views more  JMLR 2010»
14 years 6 months ago
Structured Sparse Principal Component Analysis
We present an extension of sparse PCA, or sparse dictionary learning, where the sparsity patterns of all dictionary elements are structured and constrained to belong to a prespeci...
Rodolphe Jenatton, Guillaume Obozinski, Francis Ba...
96
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BMCBI
2005
101views more  BMCBI 2005»
14 years 11 months ago
PALSSE: A program to delineate linear secondary structural elements from protein structures
Background: The majority of residues in protein structures are involved in the formation of helices and -strands. These distinctive secondary structure patterns can be used to rep...
Indraneel Majumdar, S. Sri Krishna, Nick V. Grishi...
CSDA
2010
132views more  CSDA 2010»
14 years 11 months ago
Approximate low-rank factorization with structured factors
An approximate rank revealing factorization problem with structure constraints on the normalized factors is considered. Examples of structure, motivated by an application in micro...
Ivan Markovsky, Mahesan Niranjan