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SDM
2011
SIAM
232views Data Mining» more  SDM 2011»
14 years 7 months ago
A Sequential Dual Method for Structural SVMs
In many real world prediction problems the output is a structured object like a sequence or a tree or a graph. Such problems range from natural language processing to computationa...
Shirish Krishnaj Shevade, Balamurugan P., S. Sunda...
RECOMB
2004
Springer
16 years 4 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
CCECE
2006
IEEE
15 years 10 months ago
Evaluation of RNA Secondary Structure Motifs using Regression Analysis
Recent experimental evidences have shown that ribonucleic acid (RNA) plays a greater role in the cell than previously thought. An ensemble of RNA sequences believed to contain sig...
Mohammad Anwar, Marcel Turcotte
CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
15 years 9 months ago
Statistical Inference for Well-ordered Structures in Nucleotide Sequences
Distinct, local structures are frequently correlated with functional RNA elements involved in posttranscriptional regulation of gene expression. Discovery of microRNAs (miRNAs) su...
Shu-Yun Le, Jih-H. Chen, Jacob V. Maizel
ISMB
2004
15 years 5 months ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo