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» Structured Sparsity in Structured Prediction
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BMCBI
2010
153views more  BMCBI 2010»
15 years 5 months ago
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
Background: Structural variations caused by a wide range of physico-chemical and biological sources directly influence the function of a protein. For enzymatic proteins, the struc...
Drew H. Bryant, Mark Moll, Brian Y. Chen, Viachesl...
BMCBI
2011
14 years 8 months ago
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence
Background: Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of differen...
Holger Pillmann, Klas Hatje, Florian Odronitz, Bjo...
BMCBI
2007
180views more  BMCBI 2007»
15 years 5 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
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BMCBI
2008
112views more  BMCBI 2008»
15 years 5 months ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...
ICDE
2002
IEEE
102views Database» more  ICDE 2002»
16 years 6 months ago
Cost Models for Overlapping and Multi-Version B-Trees
Overlapping and multi-version techniques are two popular frameworks that transform an ephemeral index into a multiple logical-tree structure in order to support versioning databas...
Yufei Tao, Dimitris Papadias, Jun Zhang