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» Structured Sparsity in Structured Prediction
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CIBCB
2006
IEEE
15 years 8 months ago
Optimization of the Sliding Window Size for Protein Structure Prediction
- Sliding window based methods are relatively often applied in prediction of various aspects related to protein structure. Despite their wide spread use, researchers did not establ...
Ke Chen, Lukasz A. Kurgan, Jishou Ruan
114
Voted
BMCBI
2010
139views more  BMCBI 2010»
15 years 2 months ago
RNAstructure: software for RNA secondary structure prediction and analysis
Background: To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of...
Jessica S. Reuter, David H. Mathews
MSR
2009
ACM
15 years 8 months ago
Does calling structure information improve the accuracy of fault prediction?
Previous studies have shown that software code attributes, such as lines of source code, and history information, such as the number of code changes and the number of faults in pr...
Yonghee Shin, Robert M. Bell, Thomas J. Ostrand, E...
BIBE
2003
IEEE
133views Bioinformatics» more  BIBE 2003»
15 years 7 months ago
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...
143
Voted
BMCBI
2006
129views more  BMCBI 2006»
15 years 1 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...