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MICRO
1994
IEEE
124views Hardware» more  MICRO 1994»
15 years 10 months ago
A comparison of two pipeline organizations
We examine two pipeline structures which are employed in commercial microprocessors. The first is the load-use interlock (LUI) pipeline, which employs an interlock to ensure corre...
Michael Golden, Trevor N. Mudge
DNA
2004
Springer
102views Bioinformatics» more  DNA 2004»
15 years 9 months ago
Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes
To design DNA nano-machines or analyze DNA molecular reactions, it is important to be able to predict the energy landscape of molecular structures and the energy barrier of a trans...
Mitsuhiro Kubota, Masami Hagiya
HPDC
2010
IEEE
15 years 7 months ago
Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...
181
Voted
BMCBI
2007
115views more  BMCBI 2007»
15 years 6 months ago
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
Background: In structural genomics, an important goal is the detection and classification of protein–protein interactions, given the structures of the interacting partners. We h...
Guillaume Launay, Raul Mendez, Shoshana J. Wodak, ...
165
Voted
WABI
2007
Springer
133views Bioinformatics» more  WABI 2007»
16 years 6 days ago
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
Chunmei Liu, Yinglei Song, Louis W. Shapiro