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» Structured Sparsity in Structured Prediction
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BMCBI
2010
93views more  BMCBI 2010»
15 years 6 months ago
Hybridization thermodynamics of NimbleGen Microarrays
Background: While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence depend...
Ulrike Mückstein, Germán G. Leparc, Al...
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
BMCBI
2006
202views more  BMCBI 2006»
15 years 6 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...
ICIP
2009
IEEE
15 years 3 months ago
Light Speed Labeling for RISC architectures
This article introduces a fast algorithm for Connected Component Labeling of binary images called Light Speed Labeling. It is segment-based and a line-relative labeling that was e...
Lionel Lacassagne, Bertrand Zavidovique
JMLR
2010
160views more  JMLR 2010»
15 years 29 days ago
Neural conditional random fields
We propose a non-linear graphical model for structured prediction. It combines the power of deep neural networks to extract high level features with the graphical framework of Mar...
Trinh Minh Tri Do, Thierry Artières