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» Structured Sparsity in Structured Prediction
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CDES
2006
97views Hardware» more  CDES 2006»
15 years 3 months ago
Protein Secondary Structure Prediction Accuracy versus Reduction Methods
Predicting protein secondary structure is a key step in determining the 3D structure of a protein that determines its function. The Dictionary of Secondary Structure of Proteins (...
Saad Osman Abdalla Subair, Safaai Deris
CORR
2010
Springer
130views Education» more  CORR 2010»
15 years 2 months ago
Approximated Structured Prediction for Learning Large Scale Graphical Models
In this paper we propose an approximated structured prediction framework for large scale graphical models and derive message-passing algorithms for learning their parameters effic...
Tamir Hazan, Raquel Urtasun
APBC
2004
125views Bioinformatics» more  APBC 2004»
15 years 3 months ago
A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction
Protein structure prediction is considered to be the holy grail of bioinformatics. Ab initio and homology modelling are two important groups of methods used in protein structure p...
Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schr...
BMCBI
2007
143views more  BMCBI 2007»
15 years 2 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
BMCBI
2008
137views more  BMCBI 2008»
15 years 2 months ago
A dynamic Bayesian network approach to protein secondary structure prediction
Background: Protein secondary structure prediction method based on probabilistic models such as hidden Markov model (HMM) appeals to many because it provides meaningful informatio...
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She