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» Structured Sparsity in Structured Prediction
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217
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WABI
2010
Springer
188views Bioinformatics» more  WABI 2010»
15 years 2 months ago
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs
Abstract. We present three heuristic strategies for folding RNA sequences into secondary structures including kissing hairpin motifs. The new idea is to construct a kissing hairpin...
Corinna Theis, Stefan Janssen, Robert Giegerich
BMCBI
2005
122views more  BMCBI 2005»
15 years 3 months ago
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequenc
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
PPDP
2005
Springer
15 years 9 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
137
Voted
GECCO
2006
Springer
176views Optimization» more  GECCO 2006»
15 years 7 months ago
A genetic algorithm with backtracking for protein structure prediction
In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...
Clayton Matthew Johnson, Anitha Katikireddy
ICB
2009
Springer
141views Biometrics» more  ICB 2009»
15 years 10 months ago
Towards Structured Approaches to Arbitrary Data Selection and Performance Prediction for Speaker Recognition
We developed measures relating feature vector distributions to speaker recognition (SR) performances for performance prediction and potential arbitrary data selection for SR. We ex...
Howard Lei