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» Structured Sparsity in Structured Prediction
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JCB
2000
146views more  JCB 2000»
15 years 3 months ago
Bayesian Segmentation of Protein Secondary Structure
We present a novel method for predicting the secondary structure of a protein from its amino acid sequence. Most existing methods predict each position in turn based on a local wi...
Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag
SIGIR
2005
ACM
15 years 9 months ago
Exploiting the hierarchical structure for link analysis
Link analysis algorithms have been extensively used in Web information retrieval. However, current link analysis algorithms generally work on a flat link graph, ignoring the hiera...
Gui-Rong Xue, Qiang Yang, Hua-Jun Zeng, Yong Yu, Z...
ISMB
1997
15 years 5 months ago
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags
Abstract.) Ying Xu, Richard J. MuraF, and Edward C. Uberbacher Computer Science and Mathematics Division and tLife Sciences Division Computational methods for gene identification ...
Ying Xu, Richard J. Mural, Edward C. Uberbacher
143
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JCB
2007
97views more  JCB 2007»
15 years 3 months ago
Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Baharak Rastegari, Anne Condon
BMCBI
2008
109views more  BMCBI 2008»
15 years 4 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger