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BMCBI
2011
14 years 5 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
ICASSP
2011
IEEE
14 years 2 months ago
Epileptic seizure prediction using the spatiotemporal correlation structure of intracranial EEG
A patient-specific seizure prediction algorithm is proposed that extracts novel multivariate signal coherence features from ECoG recordings and classifies a patient’s pre-seiz...
James R. Williamson, Daniel W. Bliss, David W. Bro...
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
15 years 5 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
BMCBI
2006
102views more  BMCBI 2006»
14 years 11 months ago
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models
Background: The accuracy of protein secondary structure prediction has been improving steadily towards the 88% estimated theoretical limit. There are two types of prediction algor...
Zafer Aydin, Yucel Altunbasak, Mark Borodovsky
75
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ICASSP
2008
IEEE
15 years 5 months ago
A new Particle Filtering algorithm with structurally optimal importance function
Bayesian estimation in nonlinear stochastic dynamical systems has been addressed for a long time. Among other solutions, Particle Filtering (PF) algorithms propagate in time a Mon...
Boujemaa Ait-El-Fquih, François Desbouvries