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» Structured Weight-Based Prediction Algorithms
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WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
13 years 4 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
INLG
2010
Springer
13 years 4 months ago
Named Entity Generation Using Sampling-based Structured Prediction
The problem of Named Entity Generation is expressed as a conditional probability model over a structured domain. By defining a factor-graph model over the mentions of a text, we o...
Guillaume Bouchard
BMCBI
2010
98views more  BMCBI 2010»
13 years 6 months ago
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Background: Prediction of protein structural classes (a, b, a + b and a/b) from amino acid sequences is of great importance, as it is beneficial to study protein function, regulat...
Jian-Yi Yang, Zhen-Ling Peng, Xin Chen
BMCBI
2008
128views more  BMCBI 2008»
13 years 6 months ago
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
Christopher Bystroff, Bobbie-Jo M. Webb-Robertson