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AE
2005
Springer
15 years 3 months ago
Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
An encoding scheme for protein folding on lattice models, inspired by parametric L-systems, was proposed. The encoding incorporates problem domain knowledge in the form of predesig...
Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor
IJCAI
2007
14 years 11 months ago
Incremental Construction of Structured Hidden Markov Models
This paper presents an algorithm for inferring a Structured Hidden Markov Model (S-HMM) from a set of sequences. The S-HMMs are a sub-class of the Hierarchical Hidden Markov Model...
Ugo Galassi, Attilio Giordana, Lorenza Saitta
KDD
2012
ACM
205views Data Mining» more  KDD 2012»
13 years 6 days ago
Searching and mining trillions of time series subsequences under dynamic time warping
Most time series data mining algorithms use similarity search as a core subroutine, and thus the time taken for similarity search is the bottleneck for virtually all time series d...
Thanawin Rakthanmanon, Bilson J. L. Campana, Abdul...
JCB
1998
92views more  JCB 1998»
14 years 9 months ago
Homology Detection via Family Pairwise Search
The function of an unknown biological sequence can often be accurately inferred by identifying sequences homologous to the original sequence. Given a query set of known homologs, ...
William Noble Grundy
BMCBI
2010
153views more  BMCBI 2010»
14 years 10 months ago
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
Background: Structural variations caused by a wide range of physico-chemical and biological sources directly influence the function of a protein. For enzymatic proteins, the struc...
Drew H. Bryant, Mark Moll, Brian Y. Chen, Viachesl...