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JMLR
2010
113views more  JMLR 2010»
14 years 8 months ago
Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure
We study the problem of learning an optimal Bayesian network in a constrained search space; skeletons are compelled to be subgraphs of a given undirected graph called the super-st...
Kaname Kojima, Eric Perrier, Seiya Imoto, Satoru M...
BMCBI
2006
102views more  BMCBI 2006»
15 years 2 months ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
BMCBI
2007
99views more  BMCBI 2007»
15 years 2 months ago
Statistical significance of cis-regulatory modules
Background: It is becoming increasingly important for researchers to be able to scan through large genomic regions for transcription factor binding sites or clusters of binding si...
Dustin E. Schones, Andrew D. Smith, Michael Q. Zha...
BMCBI
2007
164views more  BMCBI 2007»
15 years 2 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
BMCBI
2005
122views more  BMCBI 2005»
15 years 1 months ago
A neural strategy for the inference of SH3 domain-peptide interaction specificity
Background: The SH3 domain family is one of the most representative and widely studied cases of so-called Peptide Recognition Modules (PRM). The polyproline II motif PxxP that gen...
Enrico Ferraro, Allegra Via, Gabriele Ausiello, Ma...