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» Study on Properties of Protein Folding Conformation Network
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IPPS
2006
IEEE
15 years 5 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
BIRD
2007
Springer
117views Bioinformatics» more  BIRD 2007»
15 years 6 months ago
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction
More and more proteins have been observed to display functions through intrinsic disorder. Such structurally flexible regions are shown to play important roles in biological proces...
Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Ye...
SSDBM
2010
IEEE
185views Database» more  SSDBM 2010»
14 years 10 months ago
DESSIN: Mining Dense Subgraph Patterns in a Single Graph
Currently, a large amount of data can be best represented as graphs, e.g., social networks, protein interaction networks, etc. The analysis of these networks is an urgent research ...
Shirong Li, Shijie Zhang, Jiong Yang
BMCBI
2005
77views more  BMCBI 2005»
14 years 11 months ago
Structural comparison of metabolic networks in selected single cell organisms
Background: There has been tremendous interest in the study of biological network structure. An array of measurements has been conceived to assess the topological properties of th...
Dongxiao Zhu, Zhaohui S. Qin
BIOCOMP
2007
15 years 1 months ago
Stability Analysis of Genetic Regulatory Network with Additive Noises
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Yufang Jin